Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U | V A adata (sceleto.markers.graph._onestep.MarkerGraphRun property) Annotator (class in sceleto) B batch_expression (sceleto.markers._hierarchy.HierarchyRun attribute) batch_key (sceleto.markers._hierarchy.HierarchyRun attribute) (sceleto.markers.graph._onestep.MarkerGraphRun attribute) batch_mean_detail() (sceleto.markers.graph._onestep.MarkerGraphRun method) build_corr_matrix() (in module sceleto.network) build_feature_matrix() (in module sceleto.network) build_gene_network() (in module sceleto.network) C cellannotator() (in module sceleto.annotation) compare_markers() (sceleto.markers._hierarchy.HierarchyRun method) compare_markers_batch() (sceleto.markers._hierarchy.HierarchyRun method) compute_corr() (in module sceleto.network) contexts (sceleto.markers._hierarchy.HierarchyRun attribute) corr_pangea() (in module sceleto.network) ctx (sceleto.markers.graph._onestep.MarkerGraphRun attribute) D dotplot() (in module sceleto) draw_graph() (in module sceleto.network) E edge_delta (sceleto.markers.graph._onestep.MarkerGraphRun attribute) edge_fc (sceleto.markers.graph._onestep.MarkerGraphRun attribute) edge_gene_df (sceleto.markers.graph._onestep.MarkerGraphRun attribute) edge_metric (sceleto.markers.graph._onestep.MarkerGraphRun attribute) F filter() (sceleto.markers.GeneFilter method) find_markers_groups() (sceleto.markers._simple.MarkersSimple method) find_markers_negative() (sceleto.markers._simple.MarkersSimple method) full_gene_lists (sceleto.markers._hierarchy.HierarchyRun attribute) G G (sceleto.markers.graph._onestep.MarkerGraphRun attribute) gene_edge_fc (sceleto.markers.graph._onestep.MarkerGraphRun attribute) gene_to_edges (sceleto.markers.graph._onestep.MarkerGraphRun attribute) GeneFilter (class in sceleto.markers) generate_gene_network() (in module sceleto.network) generate_training_X() (in module sceleto.annotation) get_common_var_raw() (in module sceleto.annotation) get_grid() (in module sceleto.network) groupby (sceleto.markers.graph._onestep.MarkerGraphRun property) H hierarchy() (in module sceleto.markers) HierarchyRun (class in sceleto.markers._hierarchy) I icls_full_dict (sceleto.markers._hierarchy.HierarchyRun attribute) icls_path_df (sceleto.markers._hierarchy.HierarchyRun attribute) impute_anno() (in module sceleto.network) impute_neighbor() (in module sceleto.network) interactive_viewer() (sceleto.markers._hierarchy.HierarchyRun method) L labels (sceleto.markers.graph._onestep.MarkerGraphRun attribute) levels (sceleto.markers._hierarchy.HierarchyRun attribute) list_cell_types() (in module sceleto.network) load_corr_db() (in module sceleto.network) logistic_model() (in module sceleto.annotation) M marker() (in module sceleto.markers) marker_rank_df (sceleto.markers._hierarchy.HierarchyRun attribute) MarkerGraphRun (class in sceleto.markers.graph._onestep) markers (sceleto.markers._simple.MarkersSimple property) (sceleto.markers.graph._onestep.MarkerGraphRun property) markers_scored (sceleto.markers._simple.MarkersSimple property) MarkersSimple (class in sceleto.markers._simple) metaannotator() (in module sceleto.annotation) N network() (in module sceleto.network) new_exp_matrix() (in module sceleto.network) note_df (sceleto.markers.graph._onestep.MarkerGraphRun attribute) P params (sceleto.markers._hierarchy.HierarchyRun attribute) plot_clustermap() (in module sceleto.network) plot_fc_threshold() (sceleto.markers.graph._onestep.MarkerGraphRun method) plot_gene_edges_fc() (sceleto.markers.graph._onestep.MarkerGraphRun method) plot_gene_levels_with_edges() (sceleto.markers.graph._onestep.MarkerGraphRun method) plot_highlight_edges() (sceleto.markers.graph._onestep.MarkerGraphRun method) plot_network() (in module sceleto.network) plot_roc() (in module sceleto.annotation) pos (sceleto.markers.graph._onestep.MarkerGraphRun attribute) predict_high() (in module sceleto.annotation) R read_process() (in module sceleto) remove_geneset() (in module sceleto) S sc_process() (in module sceleto) select_top_genes() (in module sceleto.network) show_marker() (sceleto.markers._simple.MarkersSimple method) simple() (in module sceleto.markers) specific_ranking_df (sceleto.markers.graph._onestep.MarkerGraphRun attribute) stats (sceleto.markers._simple.MarkersSimple property) suggested_thres_fc (sceleto.markers.graph._onestep.MarkerGraphRun attribute) summary() (sceleto.Annotator method) sweep_df (sceleto.markers.graph._onestep.MarkerGraphRun attribute) sweep_fc() (in module sceleto.markers) T transfer() (in module sceleto.annotation) U update() (sceleto.Annotator method) update_label() (in module sceleto.annotation) update_mask() (sceleto.Annotator method) us() (in module sceleto) V viz (sceleto.markers.graph._onestep.MarkerGraphRun attribute)